Sensitivity Analysis and Optimum Experiment Design for Microbial Inactivation


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Documentation for package ‘bioOED’ version 0.1.4

Help Pages

calculate_FIM Calculation of Fisher Information Matrix
calculate_pars_correlation Correlation Between Model Parameters Sensitivities
criterium_D D Optimality Criterium
criterium_modE Modified-E Optimality Criterium
inactivation_OED Optimum Experimental Design of Microbial Inactivation
inactivation_OED_penalty Optimum Experimental Design of Microbial Inactivation with Penalty
inactivation_sens_handler Handler for the calculation of sensitivities of inactivation models
objective_D Objective Function for the D Criterium
objective_D_penalty Objective Function for the D Criterium with Penalty
objective_Emod Objective Function for the modified-E Criterium
objective_Emod_penalty Objective Function for the modified-E Criterium with Penalty
optimize_refTemp Optimization of the Reference Temperature
penalty_function Penalty Function for OED
plot.OEDinactivation Plot of OEDinactivation
plot.parCorrelation Correlation Plot of Parameter Sensitivities
refTemp_optim_handler Hanlder for the Optimization of Reference Temperature
sensitivity_inactivation Local sensitivities of microbial inactivation