Query the Breeding Management System(s)

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Documentation for package ‘QBMS’ version 0.8.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

brapi_get_call	Internal function used for core BrAPI GET calls
build_pedigree_table	Building Pedigree Table Recursively
debug_qbms	Debug internal QBMS status object
get_crop_locations	Get the list of locations information of the current selected crop
get_germplasm_data	Get the observations data of a given germplasm name
get_germplasm_list	Get the germplasm list of the current active study
get_login_details	Login pop-up window
get_parents	Get Direct Parents
get_pedigree_table	Get the Pedigree Table
get_program_studies	Get the list of trials studies locations information of the current selected program
get_program_trials	Internal function used to retrieve the rough list of trials
get_study_data	Get the observations data of the current active study
get_study_info	Get the details/metadata of the current active study
get_trial_data	Get the observations data of the current active trial
get_trial_obs_ontology	Get the traits ontology/metadata of the current active trial
gigwa_get_samples	Get the samples list of the current active GIGWA run
gigwa_get_variants	Get variants in the selected GIGWA run
gigwa_list_dbs	Get the list of existing databases in the current GIGWA server
gigwa_list_projects	Get the list of all projects in the selected GIGWA database
gigwa_list_runs	Get the list of run names in the selected GIGWA project
gigwa_set_db	Set the current active GIGWA database by name
gigwa_set_project	Set the current active GIGWA project
gigwa_set_run	Set the current active GIGWA run
list_crops	Get the list of supported crops
list_programs	Get the list of breeding programs names
list_studies	Get the list of studies in the current active trial
list_trials	Get the list of trials in the current active breeding program
login_bms	Login to the server
login_gigwa	Login to the GIGWA server
rbindlistx	Makes one data.table from a list of many
rbindx	Combine data.frames by row, filling in missing columns
set_crop	Set the current active crop
set_program	Set the current active breeding program
set_qbms_config	Configure BMS server settings
set_study	Set the current active study by location name
set_trial	Set the current active trial